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PhD Student @ Brown

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Author: iaia

Circuit Dynamics Problem

This example is taken from the second chapter of Strogatz Nonlinear Dynamics and Chaos. Strogatz Example Ch2-01  

Circuit Dynamics, Comp Neuro, Computational Neuroscience, Neuroscience, Nonlinear Dynamics, Strogatz

Spike Triggered Analysis (STA)

This post’s notes comes from this paper, code is done in MATLAB: Sharpee TO (2013) Computational identification of receptive fields. … More

Comp Neuro, Computational Neuroscience, MATLAB, Neuro, Spike Triggered Analysis, STA, STC

Quick Reference Guide to Signaling Pathways

This is a fast and dirty outline of what’s going on in a few of the major signaling pathways. Signaling … More

Bio, Neuro, Quick Guide, Signaling Pathways

Guide to the Cranial Nerves

I had to learn these for neuroanatomy. Here’s a quick guide to the cranial nerves. Cranial Nerves

Anatomy, Brainstem, Cranial Nerves, Neuro

D-Separation

This is a topic near and dear to my heart. I’m really interested in learning more about graph theory, especially … More

D Separation, Graph Theory, Neuro

Intro to Cerebellum Structure/Circuit

More notes! There cerebellum is actually quite interesting, but these notes really only capture the structure and circuitry of the … More

cerebellum, Neuro

Overview of the Basal Ganglia

I’m studying for my Systems Neuroscience exam, so I’ll post my notes. Here’s some notes on the Basal Ganglia, a … More

Basal Ganglia, Neuro, Pathways

Voltage Clamp Experiment Problems

More studying for midterms! Enjoy this Voltage Clamp Experiment PSet. Voltage Clamp Experiment

Action Potentials, EPHYS, Neuro, Voltage Clamp

Introduction to IV Curves

I’m studying for midterms, so I’m going to post some of my notes. In these notes I go through a … More

EPHYS, IVcurves, Neuro

An RNA-Seq Protocol

I used Mac OSX to run the analysis along with a computer cluster. If you don’t have access to a … More

EdgeR, RNASEQ
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